Close Menu
  • Home
  • News
    • Local
    • State
    • National
    • World
    • HBCUs
  • Events
    • Submit Your Event
    • Promote Your Event
  • Weather
  • Traffic
  • Sports
  • Politics
  • Lifestyle
    • Faith
    • Beauty
    • Fashion
    • Food
    • Art & Literature
    • Travel
    • Senior Living
    • Black History
  • Health
  • Business
    • Investing
    • Gaming
    • Education
    • Entertainment
    • Tech
    • Real Estate
  • More
    • Health Inspections
    • A List of Our Online Black Newspapers in America
We're Social
  • Twitter
  • Facebook
  • Instagram
  • YouTube
  • LinkedIn
  • TikTok

Subscribe to Updates

Get the latest creative news from FooBar about art, design and business.

Trending
  • Brownish Sugar Extra Pound Cake
  • 3 Historic Minutes When Our Chosen Authorities In Fact Did the Right Point.
  • Sagora Senior Games
  • Midcentury Modern Gold Mines: 5 Architectural Gems That Promise a Huge Return on Investment
  • City to Hold Informational Session on Forsyth Park Gathering Space Concept • Savannah Herald
  • How Trump’s Enemies Became His Disciples
  • Diarrha N’Diaye Talks Myths Of Black Founders And Venture Capital
  • Stephen A. Smith Calls Out Democrats Over Epstein File Timing
Facebook X (Twitter) Instagram YouTube LinkedIn
Login
Savannah HeraldSavannah Herald
  • Home
  • News
    • Local
    • State
    • National
    • World
    • HBCUs
  • Events
    • Submit Your Event
    • Promote Your Event
  • Weather
  • Traffic
  • Sports
  • Politics
  • Lifestyle
    • Faith
    • Beauty
    • Fashion
    • Food
    • Art & Literature
    • Travel
    • Senior Living
    • Black History
  • Health
  • Business
    • Investing
    • Gaming
    • Education
    • Entertainment
    • Tech
    • Real Estate
  • More
    • Health Inspections
    • A List of Our Online Black Newspapers in America
Savannah HeraldSavannah Herald
Home » Skin metatranscriptomics exposes a landscape of variant in microbial task and genetics expression throughout the body
Science

Skin metatranscriptomics exposes a landscape of variant in microbial task and genetics expression throughout the body

Savannah HeraldBy Savannah HeraldNovember 3, 202518 Mins Read
Facebook Twitter Pinterest LinkedIn WhatsApp Reddit Tumblr Email
Skin metatranscriptomics reveals a landscape of variation in microbial activity and gene expression across the human body
Share
Facebook Twitter LinkedIn Pinterest Email

Scientific research study & Exploration: Discover the Globe Via Research Study and Modern Technology

  • Byrd, A. L., Belkaid, Y. & & Segre, J. A. The human skin microbiome. Nat. Rev. Microbiol. 16 , 143– 155 (2018

    CAS
    PubMed
    Google Scholar

  • Claesen, J. et al. A cutibacterium acnes antibiotic regulates human skin microbiota framework in hair origins. Sci. Transl. Drug. 12 , eaay 5445 (2020

  • Tay, A. S. L. et al. Atopic dermatitis microbiomes stratify right into ecologic dermotypes allowing microbial virulence and illness strength. J. Allergy Clin. Immunol. 147 , 1329– 1340 (2020

  • Oh, J. et al. Biogeography and originality form attribute in the human skin metagenome. Nature 514 , 59– 64 (2014

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Uberoi, A. et al. Commensal microbiota controls skin barrier attribute and repair through signaling with the aryl hydrocarbon receptor. Cell Host Microorganism 29 , 1235– 1248 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Deng, L. et al. S. aureus drives impulse and scratch-induced skin problems with a V 8 protease-PAR 1 axis. Cell 186 , 5375– 5393 (2023

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Li, H. et al. Skin commensal Malassezia globosa produced protease undermines Staphylococcus aureus biofilm growth. J. Invest. Dermatol. 138 , 1137– 1145 (2018

    CAS
    PubMed
    Google Scholar

  • Williams, M. R. et al. Quorum observing in between microbial types on the skin guards versus skin injury in atopic dermatitis. Sci. Transl. Medication. 11 , eaat 8329 (2019

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Franzosa, E. A. et al. Species-level helpful profiling of metagenomes and metatranscriptomes. Nat. Methods 15 , 962– 968 (2018

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Poh, S. E. et al. Expression of Staphylococcus aureus virulence take into consideration atopic dermatitis. JID Innov. 2 , 100130 (2022

    PubMed
    PubMed Central
    Google Scholar

  • Chua, W. et al. A Malassezia pseudoprotease controls the produced hydrolase landscape and is a feasible toxic irritant on skin. Biochimie 216 , 181– 193 (2024

    CAS
    PubMed
    Google Scholar

  • Chaves-Moreno, D. et al. Uncovering the transcriptome of Staphylococcus aureus in its all-natural certain particular niche. Sci. Rep. 6 , 33174 (2016

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Abu-Ali, G. S. et al. Metatranscriptome of human faecal microbial locations in an associate of full-grown people. Nat. Microbiol. 3 , 356– 366 (2018

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Salazar, G. et al. Genes expression modifications and area turn over differentially form the around the world sea metatranscriptome. Cell 179 , 1068– 1083 (2019

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Ziebandt, A. K. et al. Proteomics exposes serious diversification in the Staphylococcus aureus exoproteome as a result of genomic plasticity and choice genetics standard. Proteomics 10 , 1634– 1644 (2010

    CAS
    PubMed
    Google Scholar

  • Both, A. et al. Genomics of intrusive Cutibacterium acnes isolates from ingrained infections. Microbiol. Spectr. 11 , e 0474022 (2023

  • Kang, D., Shi, B., Erfe, M. C., Craft, N. & & Li, H. Vitamin B 12 manages the transcriptome of the skin microbiota in acne pathogenesis. Sci. Transl. Drug. 7 , 293 ra 103 (2015

    PubMed
    PubMed Central
    Google Scholar

  • Whitman, W. B., Coleman, D. C. & & Wiebe, W. J. Prokaryotes: the concealed mass. Proc. Natl Acad. Sci. U.S.A. 95 , 6578– 6583 (1998

    PubMed
    PubMed Central
    Google Scholar

  • Kong, H. H. et al. Performing skin microbiome research study: a strategy to the chaos. J. Invest. Dermatol. 137 , 561– 568 (2017

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Santiago-Rodriguez, T. M., Le François, B., Macklaim, J. M., Doukhanine, E. & & Hollister, E. B. The skin microbiome: existing approaches, barriers, and future directions. Microbes 11 , 1222 (2023

  • Li, Z. et al. Characterization of the human skin resistome and recognition of 2 microbiota cutotypes. Microbiome 9 , 47 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Beghini, F. et al. Integrating taxonomic, functional, and strain-level profiling of diverse microbial areas with bioBakery 3 eLife 10 , e 65088 (2021

  • Tan, C. C. S. et al. No evidence for a normal blood microbiome based upon a populace research study of 9, 770 healthy and balanced and well balanced humans. Nat. Microbiol. 8 , 973– 985 (2023

  • de Goffau, M. C. et al. Human placenta has no microbiome nevertheless can include potential microbes. Nature 572 , 329– 334 (2019

    PubMed
    PubMed Central
    Google Scholar

  • Breitwieser, F. P., Baker, D. N. & & Salzberg, S. L. KrakenUniq: favorable and fast metagenomics category making use of one-of-a-kind k-mer matters. Genome Biol. 19 , 198 (2018

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Timber, D. E., Lu, J. & & Langmead, B. Improved metagenomic evaluation with Sea serpent 2 Genome Biol. 20 , 257 (2019

  • Franzosa, E. A. et al. Connecting the metatranscriptome and metagenome of the human intestinal tract. Proc. Natl Acad. Sci. U.S.A. 111 , E 2329– E 2338 (2014

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Deng, Z. L., Münch, P. C., Mreches, R. & & McHardy, A. C. Rapid and accurate recognition of ribosomal RNA series making use of deep finding. Nucleic Acids Res. 50 , e 60 (2022

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Wu, G. et al. Genus-wide family member genomics of Malassezia defines its phylogeny, physiology, and certain particular niche change on human skin. PLoS Genet. 11 , 1005614 (2015

    Google Scholar

  • Vijaya Chandra, S. H., Srinivas, R., Dawson, T. L. & & Common, J. E. Cutaneous Malassezia : commensal, infection, or guard? Front. Cell. Contaminate. Microbiol. 10 , 614446 (2021

    PubMed
    PubMed Central
    Google Scholar

  • Chong, C. E., Bengtsson, R. J. & & Horsburgh, M. J. Relative genomics of Staphylococcus capitis reveals types elements. Front. Microbiol. 13 , 1005949 (2022

    PubMed
    PubMed Central
    Google Scholar

  • Swaney, M. H., Nelsen, A., Sandstrom, S. & & Kalan, L. R. Sweat and sebum choices of the human skin microbiota. Microbiol. Spectr. 11 , e 0418022 (2023

  • Prohic, A., Jovovic Sadikovic, T., Krupalija-Fazlic, M. & & Kuskunovic-Vlahovljak, S. Malassezia key ins healthy and balanced skin and in skin-related issues. Int. J. Dermatol. 55 , 494– 504 (2016

    PubMed
    Google Scholar

  • Magiatis, P. et al. Malassezia yeasts generate a collection of extremely effective activators of the Ah (dioxin) receptor recognized in contaminated human skin. J. Invest. Dermatol. 133 , 2023– 2030 (2013

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Murphy, G. R. et al. Relationships in between electrolyte and amino acid cosmetics in sweat throughout exercise recommend a function for amino acids and K + in reabsorption of Na + and Cl − from sweat. PLoS ONE 14 , e 0223381 (2019

  • Imi, Y. & & Shibata, K. Nutritional facets that affect the growth of 5 -aminolevulinic acid, a necessary intermediate of heme biosynthesis. J. Nutr. Sci. Vitaminol. (Tokyo) 67 , 339– 350 (2021

    CAS
    PubMed
    Google Scholar

  • Leasure, C. S., Grunenwald, C. M., Choby, J. E., Sauer, J. D. & & Skaar, E. P. Maintenance of heme homeostasis in Staphylococcus aureus with post-translational regulation of glutamyl-tRNA reductase. J. Bacteriol. 205 , e 0017123 (2023

  • Thiele, J. J., Weber, S. U. & & Packer, L. Sebaceous gland secretion is a significant physiologic training course of vitamin E circulation to skin. J. Invest. Dermatol. 113 , 1006– 1010 (1999

    CAS
    PubMed
    Google Scholar

  • Leung, M. H. Y. et al. Skin microbiome sets apart right into one-of-a-kind cutotypes with distinctive metabolic attributes upon direct exposure to polycyclic aromatic hydrocarbons. Microbiome 11 , 124 (2023

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Zheng, Y. et al. Commensal Staphylococcus epidermidis contributes to skin obstacle homeostasis by developing safety ceramides. Cell Host Bacterium 30 , 301– 313 (2022

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Jourdain, R. et al. Expedition of scalp area lipids exposes squalene peroxide as a prospective celebrity in dandruff problem. Arc. Dermatol. Res. 308 , 153– 163 (2016

    PubMed Central
    Google Scholar

  • Baker, L. B. Physiology of gland feature: the functions of sweating and sweat make-up in human wellness and health. Temperature Level (Austin) 6 , 211– 259 (2019

    PubMed
    Google Scholar

  • Wang, X. et al. PhoU 2 yet not PhoU 1 as a vital regulatory authority of biofilm growth and resistance to many stress by signing up with numerous necessary metabolic treatments in Staphylococcus epidermidis J. Bacteriol. 199 , e 00219 – 17 (2017

  • Avican, K. et al. RNA atlas of human microbial microorganisms uncovers anxiousness attributes connected to infection. Nat. Commun. 12 , 3282 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Palmgren, M. P-type ATPases: a lot more enigmas passed on repair. J. Biol. Chem. 299 , 105352 (2023

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Cohn, J. R. & & Emmett, E. A. The discharging of trace steels in human sweat. Ann. Clin. Laboratory. Sci. 8 , 270– 275 (1978

    CAS
    PubMed
    Google Scholar

  • Kuan, W. H., Chen, Y. L. & & Liu, C. L. Discharging of Ni, Pb, Cu, As, and Hg in sweat under 2 sweating problems. Int. J. Environ. Res. Public Health 19 , 4323 (2022

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Chandrangsu, P., Rensing, C. & & Helmann, J. D. Steel homeostasis and resistance in germs. Nat. Rev. Microbiol. 15 , 338– 350 (2017

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Jenior, M. L., Moutinho, T. J., Dougherty, B. V. & & Papin, J. A. Transcriptome-guided avaricious change evaluation enhances forecasts with metabolic networks in complex environments. PLoS Comput. Biol. 16 , e 1007099 (2020

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Xiao, X. et al. The obligation of short-chain fats in inflammatory skin disease. Front. Microbiol. 13 , 1083432 (2023

    PubMed
    PubMed Central
    Google Scholar

  • Gonzalez-Garcia, R. A., McCubbin, T., Turner, M. S., Nielsen, L. K. & & Marcellin, E. Design Escherichia coli for propionic acid manufacturing via the Timber– Werkman cycle. Biotechnol. Bioeng. 117 , 167– 183 (2020

    CAS
    PubMed
    Google Scholar

  • Pedestrian, M. C. & & van der Donk, W. A. The great deals of features of glutamate in metabolic price. J. Ind. Microbiol. Biotechnol. 43 , 419– 430 (2016

    CAS PubMed Google Scholar

  • Heilbronner, S., Krismer, B., Brötz-Oesterhelt, H. & Peschel, A. The microbiome-shaping functions of bacteriocins. Nat. Rev. Microbiol. 19 , 726– 739 (2021

    CAS
    PubMed
    Google Scholar

  • Nakazono, K. et al. Overall series of epidermin and nukacin encoding plasmids from oral-derived Staphylococcus epidermidis and their anti-bacterial task. PLoS ONE 17 , e 0258283 (2022

  • Ebner, P. et al. Lantibiotic production is an issue for the creating staphylococci. Sci. Rep. 8 , 7471 (2018

    PubMed
    PubMed Central
    Google Scholar

  • Atanasova, N. S., Pietilä, M. K. & & Oksanen, H. M. Diverse antimicrobial communications of halophilic archaea and microbes cross geographical ranges and cross the domain name obstacle. Microbiologyopen 2 , 811– 825 (2013

    PubMed
    PubMed Central
    Google Scholar

  • Makarova, K. S. et al. Antimicrobial peptides, polymorphic pollutants, and self-nonself acknowledgment systems in archaea: an untapped depot for intermicrobial issues. mBio 10 , e 00715 – 19 (2019

  • Ziegenhain, C. et al. Loved one analysis of single-cell RNA sequencing approaches. Mol. Cell 65 , 631– 643 (2017

    CAS
    PubMed
    Google Scholar

  • Wu, A. R. et al. Quantifiable evaluation of single-cell RNA-sequencing strategies. Nat. Techniques 11 , 41– 46 (2013

    PubMed
    PubMed Central
    Google Scholar

  • Sølberg, J. et al. The stratum corneum transcriptome in atopic dermatitis can be reviewed by tape removing. J. Dermatol. Sci. 101 , 14– 21 (2021

    PubMed
    Google Scholar

  • Amorim, C. F. et al. Variable genetics expression and bloodsucker great deals anticipate therapy cause cutaneous leishmaniasis. Sci. Transl. Medication. 11 , eaax 4204 (2019

  • Hänzelmann, S., Castelo, R. & & Guinney, J. GSVA: genetics collection variant analysis for microarray and RNA-seq details. BMC Bioinformatics 14 , 7 (2013

    PubMed
    PubMed Central
    Google Scholar

  • O’Shea, J. J. et al. Signal transduction and Th 17 cell difference. Bacterias Contaminate. 11 , 599– 611 (2009

    PubMed
    PubMed Central
    Google Scholar

  • Tham, K. C. et al. Unique skin microbiome location frameworks in genetic ichthyosis. Br. J. Dermatol. 187 , 557– 570 (2022

    PubMed Central
    Google Scholar

  • O’Neill, A. M. et al. Acknowledgment of a human skin commensal bacterium that exactly gets rid of Cutibacterium acnes J. Invest. Dermatol. 140 , 1619– 1628 (2020

    PubMed
    PubMed Central
    Google Scholar

  • Peschel, A. & & Otto, M. Phenol-soluble modulins and staphylococcal infection. Nat. Rev. Microbiol. 11 , 667– 673 (2013

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Jumper, J. et al. Very specific healthy protein structure projection with AlphaFold. Nature 596 , 583– 589 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • van Kempen, M. et al. Quick and accurate healthy and balanced protein framework search with Foldseek. Nat. Biotechnol. 42 , 243– 246 (2023

    PubMed
    PubMed Central
    Google Scholar

  • Zindel, S. et al. The papain prevention (SPI) of Streptomyces mobaraensis prevents microbial cysteine proteases and is a villain of microbial growth. Antimicrob. Reps Chemother. 57 , 3388– 3391 (2013

    PubMed
    PubMed Central
    Google Scholar

  • Janda, J. M. & & Abbott, S. L. 16 S rRNA genes sequencing for microbial recognition in the evaluation lab: ands additionally, threats, and mistakes. J. Clin. Microbiol. 45 , 2761– 2764 (2007

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Taj, B. et al. MetaPro: a scalable and reproducible details handling and analysis pipeline for metatranscriptomic exam of microbial communities. Microbiome 11 , 143 (2023

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Westreich, S. T., Treiber, M. L., Mills, D. A., Korf, I. & & Lemay, D. G. SAMSA 2: a standalone metatranscriptome analysis pipe. BMC Bioinformatics 19 , 175 (2018

    PubMed
    PubMed Central
    Google Scholar

  • Gihawi, A. et al. Considerable information evaluation errors withdraw cancer cells microbiome searchings for. mBio 14 , e 0160723 (2023

  • Liao, W. W. et al. A draft human pangenome referral. Nature 617 , 312– 324 (2023

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Alarm system, J. et al. Pangenomics makes it feasible for genotyping of recognized building variations in 5202 differed genomes. Scientific Research 374 , abg 8871 (2021

  • Sibbesen, J. A. et al. Haplotype-aware pantranscriptome evaluations using interlaced pangenome charts. Nat. Methods 20 , 239– 247 (2023

    CAS
    PubMed
    Google Scholar

  • Smith, T., Heger, A. & & Sudbery, I. UMI-tools: modeling sequencing errors in one-of-a-kind molecular identifiers to improve metrology precision. Genome Res. 27 , 491– 499 (2017

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Hall, J. B. et al. Privacy and recognition of the follicular microbiome: impacts for acne research study. J. Invest. Dermatol. 138 , 2033– 2040 (2018

    CAS
    PubMed
    Google Scholar

  • Nestle, F. O., Di Meglio, P., Qin, J. Z. & & Nickoloff, B. J. Skin immune guards in health and problem. Nat. Rev. Immunol. 9 , 679– 691 (2009

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Conwill, A. et al. Composition promotes neutral conjunction of stress in the human skin microbiome. Cell Host Bacterium 30 , 171– 182 (2022

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Plotkin, L. I., Mathov, I., Squiquera, L. & & Leoni, J. Arachidonic acid released from epithelial cells by Malassezia furfur phospholipase A 2 : a prospective pathophysiologic system. Mycologia 90 , 163– 169 (1998

    CAS
    Google Scholar

  • Potter, A. D. et al. Host nutrient scene drives an important feature for aspartate biosynthesis throughout intrusive Staphylococcus aureus infection. Proc. Natl Acad. Sci. USA 117 , 12394– 12401 (2020

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • DeMars, Z., Singh, V. K. & & Bose, J. L. Exogenous fats restore Staphylococcus aureus lipid cosmetics using fat kinase. J. Bacteriol. 202 , e 00128 – 20 (2020

  • Onyango, L. A. & & Alreshidi, M. M. Adaptive metabolic price in staphylococci: survival and willpower in environmental and scientific arrangements. J. Pathog. 2018 , 1092632 (2018

    PubMed
    PubMed Central
    Google Scholar

  • Perez, K. & & Patel, R. Survival of Staphylococcus epidermidis in fibroblasts and osteoblasts. Contaminate. Immun. 86 , e 00237 – 18 (2018

  • Naik, S. et al. Commensal– dendritic-cell communication defines an unique security skin immune trademark. Nature 520 , 104– 108 (2015

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Lam, T. H. et al. Comprehending the microbial basis of body odor in pre-pubescent youngsters and teens. Microbiome 6 , 213 (2018

    PubMed
    PubMed Central
    Google Scholar

  • Bordbar, A., Monk, J. M., King, Z. A. & & Palsson, B. O. Constraint-based styles anticipate metabolic and affiliated mobile features. Nat. Rev. Genet. 15 , 107– 120 (2014

    CAS
    PubMed
    Google Scholar

  • Kim, J., Kim, G. L., Norambuena, J., Boyd, J. M. & & Parker, D. Effect of the pentose phosphate course on metabolic price and pathogenesis of Staphylococcus aureus PLoS Pathog. 19 , e 1011531 (2023

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Sanford, J. A., O’Neill, A. M., Zouboulis, C. C. & & Gallo, R. L. Short-chain fats from Cutibacterium acnes turn on both an authorized and epigenetic inflammatory reaction in human sebocytes. J. Immunol. 202 , 1767– 1776 (2019

    CAS
    PubMed
    Google Scholar

  • Chia, M. et al. Skin metatranscriptomics datasets and large proclaim Chia et al., 2025 figshare https://doi.org/ 10 6084/ m 9 figshare.c. 7902962 v 1 (2025

  • Chia, M. Shotgun metagenomics & & metatranscriptomics Nextflow pipe. GitHub https://github.com/Chiamh/meta-omics-nf (2025

  • Sashihara, T. et al. An one-of-a-kind lantibiotic, nukacin ISK- 1, of Staphylococcus warneri ISK- 1: cloning of the architectural genetics and acknowledgment of the framework. Biosci. Biotechnol. Biochem. 64 , 2420– 2428 (2000

    CAS
    PubMed
    Google Scholar

  • DI Tommaso, P. et al. Nextflow makes it feasible for reproducible computational process. Nat. Biotechnol. 35 , 316– 319 (2017

    PubMed
    Google Scholar

  • Chen, S., Zhou, Y., Chen, Y. & & Gu, J. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34 , i 884– i 890 (2018

    PubMed
    PubMed Central
    Google Scholar

  • Li, H. & & Durbin, R. Quick and specific quick read placing with Burrows– Wheeler change. Bioinformatics 25 , 1754– 1760 (2009

    PubMed Central
    Google Scholar

  • Li, H. et al. The Collection Alignment/Map design and SAMtools. Bioinformatics 25 , 2078– 2079 (2009

    PubMed
    PubMed Central
    Google Scholar

  • Dobin, A. et al. STAR: ultrafast international RNA-seq aligner. Bioinformatics 29 , 15– 21 (2013

    Google Scholar

  • Lu, J., Breitwieser, F. P., Thielen, P. & & Salzberg, S. L. Bracken: estimating selections wealth in metagenomics details. PeerJ Comput. Sci. 2017 , e 104 (2017

    Google Scholar

  • Langmead, B. & & Salzberg, S. L. Rapid gapped-read positioning with Bowtie 2 Nat. Methods 9 , 357– 359 (2012

    PubMed Central
    Google Scholar

  • Suzek, B. E., Wang, Y., Huang, H., McGarvey, P. B. & & Wu, C. H. UniRef collections: a thorough and scalable selection for enhancing collection resemblance searches. Bioinformatics 31 , 926– 932 (2015

    Google Scholar

  • Buchfink, B., Reuter, K. & & Drost, H. G. Delicate healthy and balanced protein positionings at tree-of-life range using ruby. Nat. Methods 18 , 366– 368 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Cantalapiedra, C. P., Hern̗andez- Plaza, A., Letunic, I., Bork, P. & & Huerta-Cepas, J. eggNOG-mapper v 2: helpful note, orthology jobs, and domain forecast at the metagenomic variety. Mol. Biol. Evol. 38 , 5825– 5829 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Huerta-Cepas, J. et al. eggNOG 5.0: a bought, functionally and phylogenetically annotated orthology source based upon 5090 microorganisms and 2502 infections. Nucleic Acids Res. 47 , D 309– D 314 (2019

    CAS
    PubMed
    Google Scholar

  • Zhang, Y. et al. ProPan: an extensive data source for profiling prokaryotic pan-genome attributes. Nucleic Acids Res. 51 , D 767– D 776 (2023

    CAS
    PubMed
    Google Scholar

  • Patro, R., Duggal, G., Love, M. I., Irizarry, R. A. & & Kingsford, C. Salmon: fast and bias-aware metrology of records expression using dual-phase thinking. Nat. Methods 14 , 417– 419 (2017

    PubMed Central
    Google Scholar

  • Mallick, H. et al. Multivariable organization exploration in population-scale meta-omics looks into. PLoS Comput. Biol. 17 , e 1009442 (2021

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Fernandes, A. D. et al. Incorporating the evaluation of high-throughput sequencing datasets: recognizing RNA-seq, 16 S rRNA genes sequencing and careful development experiments by compositional information evaluation. Microbiome 2 , 15 (2014

    PubMed
    PubMed Central
    Google Scholar

  • Love, M. I., Huber, W. & & Anders, S. Moderated estimate of fold modification and diffusion for RNA-seq information with DESeq 2 Genome Biol. 15 , 550 (2014

    PubMed
    PubMed Central
    Google Scholar

  • Ritchie, M. E. et al. limma powers differential expression examinations for RNA-sequencing and microarray looks into. Nucleic Acids Res. 43 , e 47 (2015

    PubMed
    PubMed Central
    Google Scholar

  • Yu, G., Wang, L. G., Han, Y. & & He, Q. Y. clusterProfiler: an R prepare for contrasting natural themes amongst genetics collections. OMICS 16 , 284 (2012

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Magnúsdóttir, S. et al. Generation of genome-scale metabolic reconstructions for 773 participants of the human gastrointestinal system microbiota. Nat. Biotechnol. 35 , 81– 89 (2016

    PubMed
    Google Scholar

  • Ebrahim, A., Lerman, J. A., Palsson, B. O. & & Hyduke, D. R. COBRApy: COnstraints-Based Fixing and Analysis for Python. BMC Syst. Biol. 7 , 74 (2013

    PubMed
    PubMed Central
    Google Scholar

  • Swirl, S. R. Accelerated account HMM searches. PLoS Comput. Biol. 7 , e 1002195 (2011

  • Edgar, R. C. Muscle 5: high-accuracy positioning collections make it feasible for honest evaluations of collection homology and phylogeny. Nat. Commun. 13 , 6968 (2022

  • Teufel, F. et al. SignalP 6.0 expects all 5 sort of signal peptides using healthy protein language versions. Nat. Biotechnol. 40 , 1023– 1025 (2022

    CAS
    PubMed
    PubMed Central
    Google Scholar

  • Chia, M. et al. Skin metatranscriptomics reveals landscape of variation in microbial job and genetics expression throughout the body. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB 89273 (2025

  • Have a look at the full blog post from the initial source

    .

    Agriculture Biochemical reaction networks Bioinformatics Biomedical Engineering/Biotechnology Biomedicine Biotechnology Breakthrough Discoveries climate change Earth and Planetary Science Environmental Policy Environmental Updates general Global Warming Health & Science Life Sciences medical research microbiome NASA Updates Nature & Wildlife Renewable Energy Science and Innovation Science in the News Science news Scientific Community Scientific Research Space Exploration STEM Education Sustainable Future Technology and Science Transcriptomics
    Share. Facebook Twitter Pinterest LinkedIn WhatsApp Reddit Tumblr Email
    Savannah Herald
    • Website

    Related Posts

    Science November 13, 2025

    Woodlands with varied water-use techniques reveal higher dry spell resistance

    Health November 14, 2025

    Which Is Better for Nutrition and Blood Sugar?

    Health November 14, 2025

    The 9 Worst Things to Say to Someone Getting Divorced

    Science November 8, 2025

    RNA security boosters for long lasting base-modified mRNA therapies

    Science November 11, 2025

    To Be Even More Innovative, Immigrate

    Science November 5, 2025

    It was a great political election for the environment

    Comments are closed.

    Don't Miss
    Gaming September 3, 2025By Savannah Herald05 Mins Read

    Xbox Series X|S vs Xbox One Sales Comparison

    September 3, 2025

    Game On: Latest in Gaming News, Reviews & Industry Buzz by William D’Angelo , posted…

    Drax appoints Deidra L. Jackson as Senior Vice President of Corporate Affairs for North America

    August 28, 2025

    8 Major Harris Songs That Showcase His Soulful Legacy. – ThyBlackMan.com

    September 3, 2025

    The plastic inside us: just how microplastics might be improving our mind and bodies|Plastics

    October 12, 2025

    Georgia Power’s massive data center expansion includes a lot of gas

    August 4, 2025
    Archives
    • November 2025
    • October 2025
    • September 2025
    • August 2025
    • July 2025
    • June 2025
    • May 2025
    • April 2025
    • March 2025
    • February 2025
    • January 2025
    • December 2024
    Categories
    • Art & Literature
    • Beauty
    • Black History
    • Business
    • Climate
    • Education
    • Entertainment
    • Faith
    • Fashion
    • Food
    • Gaming
    • HBCUs
    • Health
    • Health Inspections
    • Home & Garden
    • Investing
    • Local
    • Lowcountry News
    • National
    • News
    • Obituaries
    • Politics
    • Real Estate
    • Science
    • Senior Living
    • Sports
    • SSU Homecoming 2024
    • State
    • Tech
    • Travel
    • World
    Savannah Herald Newsletter

    Subscribe to Updates

    A round up interesting pic’s, post and articles in the C-Port and around the world.

    About Us
    About Us

    The Savannah Herald is your trusted source for the pulse of Coastal Georgia and the Low County of South Carolina. We're committed to delivering timely news that resonates with the African American community.

    From local politics to business developments, we're here to keep you informed and engaged. Our mission is to amplify the voices and stories that matter, shining a light on our collective experiences and achievements.
    We cover:
    🏛️ Politics
    💼 Business
    🎭 Entertainment
    🏀 Sports
    🩺 Health
    💻 Technology
    Savannah Herald: Savannah's Black Voice 💪🏾

    Our Picks

    McCormick buys majority of Herdez JV in Mexico

    November 1, 2025

    Exactly how to inform what’s following.

    November 11, 2025

    Scent Fantastic All The Time: My Sure-fire Fragrance Layering Regimen

    August 28, 2025

    Why This Exec Order Isn’t the Success It Insurance claims to Be for HBCUs

    November 3, 2025

    A review of A Yellowed Notebook by Beth SKMorris – Compulsive Reader

    September 3, 2025
    Categories
    • Art & Literature
    • Beauty
    • Black History
    • Business
    • Climate
    • Education
    • Entertainment
    • Faith
    • Fashion
    • Food
    • Gaming
    • HBCUs
    • Health
    • Health Inspections
    • Home & Garden
    • Investing
    • Local
    • Lowcountry News
    • National
    • News
    • Obituaries
    • Politics
    • Real Estate
    • Science
    • Senior Living
    • Sports
    • SSU Homecoming 2024
    • State
    • Tech
    • Travel
    • World
    • Privacy Policies
    • Disclaimers
    • Terms and Conditions
    • About Us
    • Contact Us
    • Opt-Out Preferences
    • Accessibility Statement
    Copyright © 2002-2025 Savannahherald.com All Rights Reserved. A Veteran-Owned Business

    Type above and press Enter to search. Press Esc to cancel.

    Manage Consent
    To provide the best experiences, we use technologies like cookies to store and/or access device information. Consenting to these technologies will allow us to process data such as browsing behavior or unique IDs on this site. Not consenting or withdrawing consent, may adversely affect certain features and functions.
    Functional Always active
    The technical storage or access is strictly necessary for the legitimate purpose of enabling the use of a specific service explicitly requested by the subscriber or user, or for the sole purpose of carrying out the transmission of a communication over an electronic communications network.
    Preferences
    The technical storage or access is necessary for the legitimate purpose of storing preferences that are not requested by the subscriber or user.
    Statistics
    The technical storage or access that is used exclusively for statistical purposes. The technical storage or access that is used exclusively for anonymous statistical purposes. Without a subpoena, voluntary compliance on the part of your Internet Service Provider, or additional records from a third party, information stored or retrieved for this purpose alone cannot usually be used to identify you.
    Marketing
    The technical storage or access is required to create user profiles to send advertising, or to track the user on a website or across several websites for similar marketing purposes.
    • Manage options
    • Manage services
    • Manage {vendor_count} vendors
    • Read more about these purposes
    View preferences
    • {title}
    • {title}
    • {title}
    Ad Blocker Enabled!
    Ad Blocker Enabled!
    Our website is made possible by displaying online advertisements to our visitors. Please support us by disabling your Ad Blocker.

    Sign In or Register

    Welcome Back!

    Login below or Register Now.

    Lost password?

    Register Now!

    Already registered? Login.

    A password will be e-mailed to you.